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Table 2 Integration of differentially expressed genes with array CGH data

From: Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks

CAL-33 SP (#303) CAL-33 RP (#327)
Gene name FC   Gene name FC  
PTGS1 16.417 gain PTGS1 20.52 gain
TLR4 10.333 IL7R 10.643
SLC2A6 7.167 SLC2A6 7.13
TNC 5.478 SLC12A7 6.931
PHF11 4.886 COL5A1 6.608
PAPPA 4.594 CERCAM 6.381
MX2 4.457 PDZD2 5.726
LHFP 4.442 PTGER4 5.05
RGCC 4.285 STXBP1 4.377
GTF2F2 3.767 INPP5E 3.797
BACE2 3.755 NKD2 3.785
NEK3 3.564 SLC1A3 3.784
MSANTD3 3.198 RICTOR 3.675
FNDC3A 2.971 PTGES 3.409
RC3H2 2.77 MVB12B 3.381
INPP5E 2.584 CDK5RAP2 3.362
RPL7A 2.543 PRRC2B 3.155
UFM1 2.485 SEC16A 2.948
SLC25A29 0.263 loss RC3H2 2.855
RCOR1 0.297 USP20 2.714
HLCS 0.305 RPL7A 2.59
CCDC85C 0.318 CARD9 2.572
IPO5 0.322 TOR1B 2.529
WRB 0.326 TRAF1 2.524
PIGP 0.329 QSOX2 2.492
CDCA4 0.36 TLR4 2.473
ZBTB42 0.361 UGCG 2.463
EVA1C 0.37 ZBTB43 2.396
BTBD6 0.37 C9orf9 2.327
TTC3 0.374 RAD1 2.255
CLN5 0.388 TRIM32 2.241
CCNK 0.389 PTRH1 2.221
DSC3 0.389 CEP72 2.208
PPP1R13B 0.389 DAP 2.035
DYRK1A 0.393 C9orf114 2.019
SIVA1 0.4 SDHA 2.013
BRF1 0.404 DOLPP1 1.997
IMPACT 0.41 RALGPS1 1.996
IFNGR2 0.416 SURF1 1.958
TIAM1 0.423 MTRR 1.855
PCCA 0.426 C5orf42 1.849
EML1 0.432 ANKRD33B 0.609
HMGN1 0.439 OR4C6 0.576
SETD3 0.441 NPR3 0.43
OSBPL1A 0.462 GOLGA6L6 0.505 loss
IFNAR2 0.54 ZNF480 0.532
LAMA3 2.1 NBPF10 1.909
CRIP1 2.463 TPTE 2.342
CDH2 5.373 NBPF9 2.945
  1. Detailed information on identified genes, their CNA status and corresponding fold changes are presented